Extracurricular laboratory:new discovery of N-(2-Aminoethyl)piperidine

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The synthesis and pharmacological activity of new (E),(Z)-[6-(alkylamino)-11H-dibenz[b,e]azepin-11-ylidene]- acetonitriles 12-45 and (E),(Z)-[6-(aminoalkoxy)-11H-dibenz[b,e]azepine-11-ylidene]acetonitriles 46-51 are described. The introduction of the cyanomethylene group into the 11-position of the 11H-dibenz[b,e]azepine framework has been carried out by a Wittig-Horner reaction under mild conditions. The (E),(Z) isomers were separated by fractional crystallization, assignment being achieved by X-ray analysis. A number of (E),(Z)-[6-(alkylamino)-11H-dibenz[b,e]azepin-11-ylidene]acetonitriles (12, 14, 16, 20) show potent neuroleptic activity (2-7 times that of clozapine) in animal tests. The screening included tests for sedative and anticholinergic activity in mice, apomorphine and tryptamine antagonism in rats, and muscle-relaxing activity in rabbits. The divergence in the activity profile in the case of the separated (E),(Z) isomers has been observed as an interesting new aspect: the (Z) isomers show a significantly higher sedative and muscle-relaxant activity, whereas the (E) isomers possess a higher anticholinergic efficacy and somewhat greater apomorphine antagonism. Broad changes in the basic side chain were made in order to investigate structure-activity relationships. The important geometrical parameters for the molecules, obtained by X-ray analysis, were compared with the corresponding features in dopamine agonists and antagonists.

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Piperidine – Wikipedia,
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The synthesis and evaluation of 3-enaminetetramic acids as antibacterial agents is reported; contrary to the analogous 3-acyltetramic acids, the enaminetetramic acid class of compound exhibits modest antibacterial activity against a limited spectrum of organisms, and even that activity is strongly dependent on the identity of the tetramate ring substituents. Moreover, these compounds appear to have a different mode of action to the analogous 3-acyltetramic acids, and appear to offer more limited opportunity for further elaboration in drug discovery.

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CL-385319, an N-substituted piperidine, is effective in inhibiting infection of H1-, H2-, and to a lesser extent, H3-typed influenza A viruses by interfering with the fusogenic function of the viral hemagglutinin. Here we show that CL-385319 is effective in inhibiting infection of highly pathogenic H5N1 influenza A virus in Madin-Darby Canine Kidney (MDCK) cells with an IC 50 of 27.03 ± 2.54 muM. This compound with low cytotoxicity (CC50 = 1.48 ± 0.01 mM) could also inhibit entry of pseudoviruses carrying hemagglutinins from H5N1 strains that were isolated from different places at different times, while it had no inhibitory activity on the entry of VSV-G pseudotyped particles. CL385319 could not inhibit N1-typed neuraminidase activity and the adsorption of H5-typed HA to chicken erythrocytes at the concentration as high as 1 mg/ml (2.8 mM). Computer-aid molecular docking analysis suggested that CL-385319 might bind to the cavity of HA2 stem region which was known to undergo significant rearrangement during membrane fusion. Pseudoviruses with M24A mutation in HA1 or F110S mutation in HA2 were resistant to CL-385319, indicating that these two residues in the cavity region may be critical for CL-385319 bindings. These findings suggest that CL-385319 can serve as a lead for development of novel virus entry inhibitors for preventing and treating H5N1 influenza A virus infection.

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Reactions of nickel(II) salts with substituted ethane-1,2-diamine where one of the amine nitrogens is a part of a flexible cyclic ring, e.g. 1-(2-aminoethyl)piperidine (L), 1-(2-aminoethyl)pyrrolidine (L?) and 4-(2-aminoethyl)morpholine (L?) produce a number of complexes of the type: (i) Ni(A-A)2X2 (where X = CF3CO2-, SCN- and NO2-; A-A represents L/L?/L?); (ii) Ni(A-A)2(CH3CN)2X2 (X = ClO4- and NO3-); (iii) Ni(A-A)2(H2O)2X2 (X = CF3SO3-, Cl-, Br- and I-); and (iv) Ni(A-A)2(H2O)4X2 (X = 0.5SO42-, 0.5SeO42- and CF3SO3-). The complexes possess octahedral geometry. The major complexes upon desolvation retain trans-geometry, some of which are cis with respect to the counter-anion and a few of them are square planar. X-ray single crystal structure analyses of trans-[NiL2(CH3CN)2] (ClO4)2, trans-[NiL2(NCS)2] (violet) and trans-[NiL?2(NCS)2] (sky-blue) have been done. The violet and sky-blue thiocyanato species have blue and green coloured isomers, respectively, and these pairs of isomers are proposed to be conformational isomers. Solid state thermal investigation of the complexes has been carried out. The complexes show thermochromism due to deaquation-anation/deaquation reaction/change of conformation. Only [NiL2](ClO4)2, [NiL?2(CF3CO2)2] and [NiL?2(NO2)2] undergo thermally induced phase transition. The effect of flexible ring size on diamine has been discussed.

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Two new chlorido-bridged dinuclear copper(II) complexes [Cu 2Cl2(L1)2] (1) and [Cu 2Cl2(L2)2] (2), where L1 and L2 are the deprotonated form of Schiff bases 2-[1-(2-morpholin-4-ylethylimino)ethyl] phenol (HL1) and 2-[1-(2-piperidin-1-ylethylimino)ethyl]phenol respectively, are prepared and structurally characterized by elemental analysis, IR spectra, and single crystal X-ray crystallography. Complex 1 crystallizes in the monoclinic space group P21/c with unit cell dimensions a = 8.0816(2) A, b = 19.1780(3) A, c = 9.6757(3) A, beta = 106.465(2), V = 1438.13(6) A3, Z = 2, R1 = 0.0409, and wR2 = 0.1085. Complex 2 crystallizes in the monoclinic space group P21/c with unit cell dimensions a = 7.7640(10) A, b = 19.930(3) A, c = 9.628(2) A, beta = 103.890(3), V = 1446.2(4) A 3, Z = 2, R1 = 0.0634, and wR 2 = 0.1316. Each Cu atom in the complexes is coordinated by three donor atoms of the Schiff bases and by two bridging Cl atoms, forming square pyramidal geometry. The Cl anions are preferred bridging groups for the construction of dinuclear copper complexes with tridentate Schiff bases.

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The viral enzyme integrase is essential for the replication of HIV-1 and, after the discovery of Isentress, represents a validated target for anti-retroviral therapy. Incorporation of the dihydroxycarbonyl pharmacophore into a pyrrolinone scaffold led to the discovery of 5-pyrrolinone-3-carboxamides as a structurally diverse class of HIV-1 integrase inhibitors.

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Two structurally similar trinuclear complexes, [Cu(Cu(mu-Cl)2L1)2] (1) and [Cu(Cu(mu-Cl)2L2)2] (2) (HL1 = 4-chloro-2-[(2-morpholin-4-ylethylimino)methyl]phenol, HL2 = 1-[(2-piperidin-1ylethylimino)methyl]naphthalen-2-ol), have been synthesized and structurally characterized. Both complexes are bridged trinuclear compounds. The central Cu in each complex is in an octahedral environment with two phenolate and four bridging chlorides. The symmetry-related terminal Cu in each complex is square pyramidal with one phenolate oxygen, one imine nitrogen and one amine nitrogen of the Schiff-base ligand, one Cl- in the basal plane, and one bridging Cl- in the apical position. The complexes and Schiff bases were tested in vitro for their antibacterial activities.

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Recent studies have identified 2,3-dimethoxy-8,9-methylenedioxy-11-[(2- dimethylamino)ethyl]-11H-isoquino[4,3-c]cinnolin-12-one (1a) as a novel topoisomerase I-targeting agent with potent cytotoxic activity. The effect of varied substituents at the 11-position of 2,3-dimethoxy-8,9-methylenedioxy-11H- isoquino[4,3-c]cinnolin-12-ones on topoisomerase I-targeting activity and cytotoxicity was evaluated. Potent TOP1-targeting activity was observed when the 11-position was substituted with either a 2-(N,N-dimethylamino)ethyl, a 2-(N,N-diethylamino)ethyl, a n-butyl, or a 2-(pyrrolidin-1-yl)ethyl group. The addition of a beta-methyl group to 1a provided an analogue with dramatically reduced TOP1-targeting activity and cytotoxicity. Analogues of 1a wherein the 2-(N,N-dimethylamino)ethyl group was replaced with a (2-tetrahydrofuranyl) methyl, a 2-(piperidin-1-yl)ethyl, or a 2-(4-methylpiperazin-1-yl)ethyl substituent exhibited decreased activity as TOP1-targeting agents. Replacement of the dimethoxy groups of 1a with hydrogen atoms resulted in an analogue with significantly decreased TOP1-targeting activity and cytotoxicity. Removal of both the vicinal dimethoxyl groups and the methylenedioxy moiety resulted in a complete loss of TOP1-targeting activity. The presence of a 9-nitro substituent in place of the 8,9-methylenedioxy group of 1a resulted in a decrease in relative TOP1-targeting activity and cytotoxicity. Compounds 1a and the 11-n-butyl analogue 1d were evaluated for antitumor activity in the human tumor xenograft model using athymic nude mice. The non-estrogen responsive breast tumor cell line MDA-MB-435 was used in these assays. At dose levels that approached its maximum tolerated dose, 1a proved to be effective in inhibiting tumor growth in vivo when administered orally or by ip injection.

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(equation presented) 2,3-Dihydroxyterephthalamides have been synthesized through a route that avoids the protection and deprotection of the phenol groups. The procedure allows for symmetric and unsymmetric amide linkages. This synthetic sequence significantly decreases the time and cost of preparation and increases the overall yield of this class of metal chelators.

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Optimization of a new series of S-adenosyl-l-homocysteine hydrolase (AdoHcyase) inhibitors based on non-adenosine analogs led to very potent compounds 14n, 18a, and 18b with IC50 values of 13 ± 3, 5.0 ± 2.0, and 8.5 ± 3.1 nM, respectively. An X-ray crystal structure of AdoHcyase with NAD+ and 18a showed a novel open form co-crystal structure. 18a in the co-crystals formed intramolecular eight membered ring hydrogen bond formations. A single crystal X-ray structure of 14n also showed an intramolecular eight-membered ring hydrogen bond interaction.

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